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ConTra is a promoter alignment analysis tool to identify transcription factor binding sites across species.

if ConTra was used to obtain data for publication, please cite the corresponding article

NEW version ConTra v2 here!

Step 1 (out of 4): select the type of analysis and specify the gene(s)/transcript(s) to be subjected to analysis

Type of analysis   Visualization: Identify binding sites for 1 or several transcription factors (TFs) in the cross-species alignment of my promoter(s).   Exploration: Identify which transcription factors (TFs) can regulate my gene(s)/transcript(s).   Enter your e-mail address to receive the results   (optional for visualisation, obligatory for exploration) Gene(s) or transcript(s) Human gene(s) or transcript(s) Example: ATOH7 more examples...   valid input: human gene name or symbol, Ensembl gene ID (ENSG), entrez gene ID, RefSeq (NM_) or Ensembl transcript ID (ENST) alignment file [multifasta, maf or CLUSTAL format] Use your own PWM collection [optional] upload file with your own PWMs format

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