HTML5 Powered with CSS3 / Styling, and Semantics

Please fill in the requested fields

Upload data.
Please note that the first and last 50bp can't be scanned (due to model size). If you need these flanks, include some extra basepairs.

OR
Warning! Genome location is not valid...
Check syntax (name:start-stop)
Location range (max. allowed 10 000 nts)
Total sum of locations (max allowed 100 000 nts)
OR
Threshold
Select Threshold
Select TFBSs to identify.
Species
Model Type
✘
Available Models:
DE
HSA
ATF1
HSA0000001.1
Aliases
✘
EWS-ATF1 FUS/ATF-1 TREB36
cAMP-dependent transcription factor ATF-1
cyclic AMP-dependent transcription factor ATF-1
DE
HSA
ATF3
HSA0000002.1
Aliases
✘
RP11-338C15.1
cAMP-dependent transcription factor ATF-3
cyclic AMP-dependent transcription factor ATF-3
DE
HSA
BACH1
HSA0000045.1
Aliases
✘
BACH-1
BTB and CNC homolog 1
HA2303
basic region leucine zipper transcriptional regulator BACH1
transcription regulator protein BACH1
DE
HSA
BDP1
HSA0000046.1
Aliases
✘
HSA238520 TAF3B1 TFC5 TFIIIB'' TFIIIB150 TFIIIB90 TFNR
RNA polymerase III transcription initiation factor B''
TATA box binding protein (TBP)-associated factor, RNA polymerase III, GTF3B subunit 1
transcription factor IIIB 150
transcription factor TFIIIB component B'' homolog
transcription factor-like nuclear regulator
DE
HSA
BHLHE40
HSA0000073.1
Aliases
✘
BHLHB2 DEC1 HLHB2 SHARP-2 STRA13 Stra14
basic helix-loop-helix domain containing, class B, 2
class B basic helix-loop-helix protein 2
class E basic helix-loop-helix protein 40
differentially expressed in chondrocytes 1
differentially expressed in chondrocytes protein 1
differentiated embryo chondrocyte expressed gene 1
enhancer-of-split and hairy-related protein 2
stimulated by retinoic acid gene 13 protein
PAF
HSA
BRCA1
HSA0000047.1
Aliases
✘
BRCAI BRCC1 BROVCA1 IRIS PNCA4 PPP1R53 PSCP RNF53
BRCA1/BRCA2-containing complex, subunit 1
RING finger protein 53
breast and ovarian cancer susceptibility protein 1
breast and ovarian cancer sususceptibility protein 1
breast cancer type 1 susceptibility protein
protein phosphatase 1, regulatory subunit 53
DE
HSA
BRF1
HSA0000048.1
Aliases
✘
BRF BRF-1 GTF3B TAF3B2 TAF3C TAFIII90 TF3B90 TFIIIB90 hBRF
B - related factor 1
TATA box binding protein (TBP)-associated factor 3C
TATA box binding protein (TBP)-associated factor, RNA polymerase III, GTF3B subunit 2
TBP - associated factor, RNA polymerase III, 90kD
general transcription factor IIIB, 90kD subunit
transcription factor IIIB 90 kDa subunit
DE
HSA
CEBPB
HSA0000070.1
Aliases
✘
PP9092 C/EBP-beta CRP2 IL6DBP LAP LIP NF-IL6 TCF5
CCAAT/enhancer-binding protein beta
interleukin 6-dependent DNA-binding protein
liver-enriched inhibitory protein
liver-enriched transcriptional activator protein
nuclear factor NF-IL6
nuclear factor of interleukin 6
transcription factor 5
DE
HSA
CREB1
HSA0000049.1
Aliases
✘
CREB
CREB-1
active transcription factor CREB
cAMP-response element-binding protein-1
cAMP-responsive element-binding protein 1
cyclic AMP-responsive element-binding protein 1
transactivator protein
DE
HSA
CREB1
HSA0000072.1
Aliases
✘
RP11-338C15.1
cAMP-dependent transcription factor ATF-3
cyclic AMP-dependent transcription factor ATF-3
DE
HSA
CTCF
HSA0000005.1
Aliases
✘
11 zinc finger transcriptional repressor
11-zinc finger protein
CTCFL paralog
transcriptional repressor CTCF
DE
HSA
CTCFL
HSA0000006.1
Aliases
✘
BORIS CT27 CTCF-T HMGB1L1 dJ579F20.2
BORIS-like protein
CTCF paralog
CTCF-like protein
HMG-1L1
brother of the regulator of imprinted sites
cancer/testis antigen 27
putative high mobility group protein 1-like 1
putative high mobility group protein B1-like 1
transcriptional repressor CTCFL
zinc finger protein CTCF-T
DE
HSA
E2F1
HSA0000068.1
Aliases
✘
E2F-1 RBAP1 RBBP3 RBP3
PBR3
PRB-binding protein E2F-1
RBAP-1
RBBP-3
retinoblastoma-associated protein 1
retinoblastoma-binding protein 3
transcription factor E2F1
DE
HSA
EGR1
HSA0000007.1
Aliases
✘
AT225 G0S30 KROX-24 NGFI-A TIS8 ZIF-268 ZNF225
EGR-1
early growth response protein 1
nerve growth factor-induced protein A
transcription factor ETR103
transcription factor Zif268
zinc finger protein 225
zinc finger protein Krox-24
DE
HSA
ELF1
HSA0000050.1
Aliases
✘
RP11-2P5.1
ETS-related transcription factor Elf-1
DE
HSA
ELK1
HSA0000008.1
Aliases
✘
ETS domain-containing protein Elk-1
ETS-like gene 1
tyrosine kinase (ELK1) oncogene
DE
HSA
ELK4
HSA0000062.1
Aliases
✘
SAP1
ETS domain-containing protein Elk-4
SAP-1
serum response factor accessory protein 1
DE
HSA
ESRRA
HSA0000051.1
Aliases
✘
ERR1 ERRa ERRalpha ESRL1 NR3B1
ERR-alpha
estrogen receptor-like 1
estrogen-related nuclear receptor alpha
nuclear receptor subfamily 3 group B member 1
steroid hormone receptor ERR1
DE
MMU
Esrrb
MMU0000009.1
Aliases
✘
Err2 Errb Estrrb Nr3b2
ERR-beta
estrogen receptor related 2
estrogen receptor-like 2
estrogen-related receptor beta
nuclear receptor subfamily 3 group B member 2
steroid hormone receptor ERR2
DE
HSA
ETS1
HSA0000010.1
Aliases
✘
ETS-1 EWSR2
Avian erythroblastosis virus E26 (v-ets) oncogene homolog-1
ets protein
p54
protein C-ets-1
v-ets avian erythroblastosis virus E2 oncogene homolog 1
DE
HSA
FOS
HSA0000011.1
Aliases
✘
AP-1 C-FOS p55
FBJ murine osteosarcoma viral (v-fos) oncogene homolog (oncogene FOS)
G0/G1 switch regulatory protein 7
activator protein 1
cellular oncogene c-fos
proto-oncogene c-Fos
DE
HSA
FOSL2
HSA0000077.1
Aliases
✘
FRA2
FOS-like antigen 2|FRA-2
DE
HSA
GABPA
HSA0000012.1
Aliases
✘
E4TF1-60 E4TF1A NFT2 NRF2 NRF2A RCH04A07
GA binding protein transcription factor alpha subunit 60kDa
GA-binding protein alpha chain
GABP subunit alpha
human nuclear respiratory factor-2 subunit alpha
nuclear respiratory factor 2 alpha subunit
nuclear respiratory factor 2 subunit alpha
transcription factor E4TF1-60
DE
HSA
GATA1
HSA0000013.1
Aliases
✘
ERYF1 GATA-1 GF-1 GF1 NFE1 XLANP XLTDA XLTT
GATA-binding factor 1
NF-E1 DNA-binding protein
erythroid transcription factor
erythroid transcription factor 1
globin transcription factor 1
transcription factor GATA1
DE
HSA
GATA2
HSA0000014.1
Aliases
✘
DCML MONOMAC NFE1B
endothelial transcription factor GATA-2
DE
HSA
GTF3C2
HSA0000063.1
Aliases
✘
TFIIIC-BETA TFIIIC110
TF3C-beta
TFIIIC 110 kDa subunit
general transcription factor 3C polypeptide 2
transcription factor IIIC 110 kDa subunit
transcription factor IIIC subunit beta
DE
HSA
HNF4A
HSA0000071.1
Aliases
✘
RP5-1013A22.1 HNF4 HNF4a7 HNF4a8 HNF4a9 HNF4alpha MODY MODY1 NR2A1 NR2A21 TCF TCF14
HNF4alpha10/11/12
TCF-14
hepatic nuclear factor 4 alpha
hepatocyte nuclear factor 4-alpha
nuclear receptor subfamily 2 group A member 1
transcription factor 14
transcription factor HNF-4
DE
HSA
IRF1
HSA0000078.1
Aliases
✘
IRF-1 MAR
interferon regulatory factor 1 isoform +I9|interferon regulatory factor 1 isoform d78|interferon regulatory factor 1 isoform delta4|interferon regulatory factor 1 isoform delta7
PAF
HSA
IRF3
HSA0000052.1
Aliases
✘
DE
MMU
Irf8
MMU0000070.1
Aliases
✘
AI893568 ICSBP IRF-8 Icsbp1 Myls
interferon consensus sequence binding protein 1|interferon consensus sequence-binding protein
DE
HSA
JUN
HSA0000003.1
Aliases
✘
AP-1 AP1 c-Jun
Jun activation domain binding protein
activator protein 1
enhancer-binding protein AP1
jun oncogene
p39
proto-oncogene c-Jun
transcription factor AP-1
v-jun avian sarcoma virus 17 oncogene homolog
v-jun sarcoma virus 17 oncogene homolog
DE
HSA
JUNB
HSA0000053.1
Aliases
✘
AP-1
activator protein 1
transcription factor jun-B
DE
HSA
KLF4
HSA0000015.1
Aliases
✘
RP11-150J11.1 EZF GKLF
Krueppel-like factor 4
endothelial Kruppel-like zinc finger protein
epithelial zinc finger protein EZF
gut-enriched krueppel-like factor
DE
HSA
MAFF
HSA0000016.1
Aliases
✘
CTA-447C4.1 U-MAF hMafF
transcription factor MafF
v-maf avian musculoaponeurotic fibrosarcoma oncogene family protein F
DE
HSA
MAFK
HSA0000017.1
Aliases
✘
NFE2U P18
basic-leucine zipper transcription factor MafK
erythroid transcription factor NF-E2 p18 subunit
nuclear factor erythroid-2, ubiquitous (p18)
transcription factor MafK
v-maf avian musculoaponeurotic fibrosarcoma oncogene family, protein K
DE
HSA
MEF2C
HSA0000018.1
Aliases
✘
C5DELq14.3 DEL5q14.3
MADS box transcription enhancer factor 2, polypeptide C
myocyte-specific enhancer factor 2C
DE
HSA
MYC
HSA0000004.1
Aliases
✘
MRTL bHLHe39 c-Myc
avian myelocytomatosis viral oncogene homolog
class E basic helix-loop-helix protein 39
myc proto-oncogene protein
myc-related translation/localization regulatory factor
proto-oncogene c-Myc
transcription factor p64
v-myc avian myelocytomatosis viral oncogene homolog
DE
MMU
Mycn
MMU0000022.1
Aliases
✘
N-myc Nmyc Nmyc-1 Nmyc1 bHLHe37 c-nmyc
N-myc proto-oncogene protein
neuroblastoma myc-related oncogene 1
DE
HSA
NANOG
HSA0000054.1
Aliases
✘
hNanog
homeobox protein NANOG
homeobox transcription factor Nanog
homeobox transcription factor Nanog-delta 48
DE
HSA
NFYA
HSA0000020.1
Aliases
✘
CBF-A CBF-B HAP2 NF-YA
CAAT box DNA-binding protein subunit A
CAAT-box DNA binding protein subunit A
CCAAT-binding transcription factor subunit B
HAP2 CCAAT-binding protein
Transcription factor NF-Y, A subunit
nuclear transcription factor Y subunit A
nuclear transcription factor Y subunit alpha
DE
HSA
NFYB
HSA0000021.1
Aliases
✘
CBF-A CBF-B HAP3 NF-YB
CAAT box DNA-binding protein subunit B
CCAAT-binding transcription factor subunit A
Transcription factor NF-Y, B subunit
nuclear transcription factor Y subunit B
nuclear transcription factor Y subunit beta
DE
HSA
NR1H3
HSA0000082.1
Aliases
✘
LXR-a LXRA RLD-1
oxysterols receptor LXR-alpha|liver X nuclear receptor alpha variant 1
DE
HSA
NR3C1
HSA0000066.1
Aliases
✘
GCCR GCR GR GRL
glucocorticoid nuclear receptor variant 1
glucocorticoid receptor
DE
HSA
NRF1
HSA0000023.1
Aliases
✘
ALPHA-PAL
NRF-1
alpha palindromic-binding protein
DE
HSA
POLR3A
HSA0000056.1
Aliases
✘
ADDH HLD7 RPC1 RPC155 hRPC155
DNA-directed RNA polymerase III largest subunit
DNA-directed RNA polymerase III subunit A
DNA-directed RNA polymerase III subunit RPC1
RNA polymerase III 155 kDa subunit
RNA polymerase III subunit C1
RNA polymerase III subunit C160
RNA polymerase III subunit RPC155-D
DE
HSA
POU5F1
HSA0000026.1
Aliases
✘
DADB-104B20.2 OCT3 OCT4 OTF-3 OTF3 OTF4 Oct-3 Oct-4
POU domain transcription factor OCT4
POU domain, class 5, transcription factor 1
POU-type homeodomain-containing DNA-binding protein
octamer-binding protein 3
octamer-binding protein 4
octamer-binding transcription factor 3
octamer-binding transcription factor-3
DE
HSA
PPARG
HSA0000083.1
Aliases
✘
CIMT1 GLM1 NR1C3 PPARG1 PPARG2 PPARgamma
peroxisome proliferator-activated receptor gamma|PPAR-gamma|nuclear receptor subfamily 1 group C member 3|peroxisome proliferator-activated nuclear receptor gamma variant 1
DE
HSA
PRDM1
HSA0000069.1
Aliases
✘
RP1-134E15.1 BLIMP1 PRDI-BF1
B-lymphocyte-induced maturation protein 1
BLIMP-1
PR domain zinc finger protein 1
PRDI-binding factor-1
beta-interferon gene positive-regulatory domain I binding factor
DE
HSA
PUM1
HSA0000076.1
Aliases
✘
RP1-65J11.4 HSPUM PUMH PUMH1 PUML1
pumilio homolog 1
pumilio-1
DE
HSA
RAD21
HSA0000055.1
Aliases
✘
CDLS4 HR21 HRAD21 MCD1 NXP1 SCC1 hHR21
NXP-1
SCC1 homolog
double-strand-break repair protein rad21 homolog
nuclear matrix protein 1
protein involved in DNA double-strand break repair
DE
HSA
RBPJ
HSA0000084.1
Aliases
✘
AOS3 CBF1 IGKJRB IGKJRB1 KBF2 RBP-J RBPJK RBPSUH SUH csl
recombining binding protein suppressor of hairless|CBF-1|H-2K binding factor-2|RBP-J kappa|RBP-JK|immunoglobulin kappa J region recombination signal binding protein 1|renal carcinoma antigen NY-REN-30|suppressor of hairless homolog
DE
HSA
RELA
HSA0000019.1
Aliases
✘
NFKB3 p65
NF-kappa-B p65delta3
nuclear factor NF-kappa-B p65 subunit
nuclear factor of kappa light polypeptide gene enhancer in B-cells 3
transcription factor p65
DE
HSA
REST
HSA0000028.1
Aliases
✘
NRSF XBR
neural-restrictive silencer factor
neuron restrictive silencer factor
repressor binding to the X2 box
DE
HSA
REST
HSA0000024.1
Aliases
✘
NRSF XBR
neural-restrictive silencer factor
neuron restrictive silencer factor
repressor binding to the X2 box
DE
HSA
RFX5
HSA0000029.1
Aliases
✘
RP11-126K1.5
DNA-binding protein RFX5
regulatory factor X 5
DE
HSA
RUNX3
HSA0000030.1
Aliases
✘
RP3-398I9.1 AML2 CBFA3 PEBP2aC
CBF-alpha-3
PEA2 alpha C
PEA2-alpha C
PEBP2 alpha C
PEBP2-alpha C
SL3-3 enhancer factor 1 alpha C subunit
SL3/AKV core-binding factor alpha C subunit
acute myeloid leukemia 2 protein
acute myeloid leukemia gene 2
core-binding factor subunit alpha-3
core-binding factor, runt domain, alpha subunit 3
oncogene AML-2
polyomavirus enhancer-binding protein 2 alpha C subunit
transcription factor AML2
DE
HSA
RXRA
HSA0000086.1
Aliases
✘
NR2B1
retinoic acid receptor RXR-alpha|nuclear receptor subfamily 2 group B member 1|retinoid X nuclear receptor alpha
DE
HSA
SIX5
HSA0000057.1
Aliases
✘
BOR2 DMAHP
DM locus-associated homeodomain protein
dystrophia myotonica-associated homeodomain protein
homeobox protein SIX5
sine oculis homeobox homolog 5
DE
HSA
SMAD4
HSA0000085.1
Aliases
✘
DPC4 JIP MADH4 MYHRS
mothers against decapentaplegic homolog 4|MAD homolog 4|SMAD
mothers against DPP homolog 4|deleted in pancreatic carcinoma locus 4|deletion target in pancreatic carcinoma 4|mothers against decapentaplegic
Drosophila
homolog of
4
DE
HSA
SP1
HSA0000031.1
Aliases
✘
specificity protein 1
transcription factor Sp1
DE
HSA
SP2
HSA0000032.1
Aliases
✘
transcription factor Sp2
DE
HSA
SP4
HSA0000033.1
Aliases
✘
HF1B SPR-1
transcription factor Sp4
DE
HSA
SPI1
HSA0000027.1
Aliases
✘
hCG_25181 OF PU.1 SFPI1 SPI-1 SPI-A
31 kDa transforming protein
31 kDa-transforming protein
SPI-1 proto-oncogene
hematopoietic transcription factor PU.1
transcription factor PU.1
DE
HSA
SREBF1
HSA0000034.1
Aliases
✘
SREBP-1c SREBP1 bHLHd1
SREBP-1
class D basic helix-loop-helix protein 1
sterol regulatory element-binding protein 1
DE
HSA
SRF
HSA0000064.1
Aliases
✘
MCM1
serum response factor
DE
HSA
STAT1
HSA0000035.1
Aliases
✘
CANDF7 ISGF-3 STAT91
signal transducer and activator of transcription 1-alpha/beta
signal transducer and activator of transcription-1
transcription factor ISGF-3 components p91/p84
DE
HSA
STAT3
HSA0000036.1
Aliases
✘
APRF HIES
DNA-binding protein APRF
acute-phase response factor
signal transducer and activator of transcription 3
PAF
HSA
TAF1
HSA0000058.1
Aliases
✘
BA2R CCG1 CCGS DYT3 DYT3/TAF1 KAT4 N-TAF1 NSCL2 OF P250 TAF2A TAFII250 XDP
TAF(II)250
TAFII-250
TBP-associated factor 250 kDa
cell cycle gene 1 protein
cell cycle, G1 phase defect
complementation of cell cycle block, G1-to-S
transcription factor TFIID p250 polypeptide
transcription initiation factor TFIID 250 kDa subunit
transcription initiation factor TFIID subunit 1
PAF
HSA
TAF7
HSA0000059.1
Aliases
✘
TAF2F TAFII55
RNA polymerase II TBP-associated factor subunit F
TAF(II)55
TAFII-55
TATA box binding protein (TBP)-associated factor, RNA polymerase II, F, 55kD
TBP-associated factor F
transcription factor IID subunit TAFII55
transcription initiation factor TFIID 55 kDa subunit
transcription initiation factor TFIID subunit 7
transcription initiation factor TFIID, 55 kDa subunit
DE
HSA
TBP
HSA0000061.1
Aliases
✘
RP1-191N21.3 GTF2D GTF2D1 HDL4 SCA17 TFIID
TATA sequence-binding protein
TATA-box binding protein N-terminal domain
TATA-box factor
TATA-box-binding protein
transcription initiation factor TFIID TBP subunit
DE
HSA
TCF12
HSA0000037.1
Aliases
✘
HEB HTF4 HsT17266 bHLHb20
DNA-binding protein HTF4
E-box-binding protein
TCF-12
class B basic helix-loop-helix protein 20
helix-loop-helix transcription factor 4
transcription factor HTF-4
DE
HSA
TEAD4
HSA0000039.1
Aliases
✘
EFTR-2 RTEF1 TCF13L1 TEF-3 TEF3 TEFR-1 hRTEF-1B
related transcription enhancer factor 1B
transcription factor 13-like 1
transcription factor RTEF-1
transcriptional enhancer factor 1-related
transcriptional enhancer factor 3
transcriptional enhancer factor TEF-3
DE
HSA
TFAP2A
HSA0000074.1
Aliases
✘
RP11-338C15.1
cAMP-dependent transcription factor ATF-3
cyclic AMP-dependent transcription factor ATF-3
DE
HSA
TFAP2C
HSA0000075.1
Aliases
✘
RP4-539E24.1 AP2-GAMMA ERF1 TFAP2G hAP-2g
activating enhancer-binding protein 2 gamma
estrogen receptor factor 1
transcription factor AP-2 gamma
transcription factor AP-2 gamma (activating enhancer-binding protein 2 gamma)
transcription factor ERF-1
DE
MMU
Tfcp2l1
MMU0000038.1
Aliases
✘
1810030F05Rik 4932442M07Rik AA575098 Cp2l1 Crtr-1 D930018N21Rik LBP-9 Tcfcp2l1
CP2-related transcriptional repressor 1
Tcfcp2-related transcriptional repressor 1
transcription factor CP2-like protein 1
transcription repressor CRTR-1
DE
HSA
TP53
HSA0000025.1
Aliases
✘
BCC7 LFS1 P53 TRP53
antigen NY-CO-13
cellular tumor antigen p53
p53 tumor suppressor
phosphoprotein p53
transformation-related protein 53
DE
HSA
USF1
HSA0000040.1
Aliases
✘
RP11-544M22.5 FCHL FCHL1 HYPLIP1 MLTF MLTFI UEF bHLHb11
class B basic helix-loop-helix protein 11
major late transcription factor 1
upstream stimulatory factor 1
DE
HSA
USF2
HSA0000041.1
Aliases
✘
FIP bHLHb12
FOS-interacting protein
c-fos interacting protein
class B basic helix-loop-helix protein 12
major late transcription factor 2
upstream stimulatory factor 2
DE
HSA
XBP1
HSA0000079.1
Aliases
✘
DE
HSA
XBP1
HSA0000080.1
Aliases
✘
DE
HSA
YY1
HSA0000042.1
Aliases
✘
DELTA INO80S NF-E1 UCRBP YIN-YANG-1
INO80 complex subunit S
YY-1
Yin and Yang 1 protein
delta transcription factor
transcriptional repressor protein YY1
DE
HSA
ZEB1
HSA0000043.1
Aliases
✘
RP11-472N13.4 AREB6 BZP DELTAEF1 FECD6 NIL2A PPCD3 TCF8 ZFHEP ZFHX1A
delta-crystallin enhancer binding factor 1
negative regulator of IL2
posterior polymorphous corneal dystrophy 3
transcription factor 8 (represses interleukin 2 expression)
zinc finger E-box-binding homeobox 1
zinc finger homeodomain enhancer-binding protein
DE
HSA
ZEB2
HSA0000081.1
Aliases
✘
HSPC082 SIP-1 SIP1 SMADIP1 ZFHX1B
zinc finger E-box-binding homeobox 2|SMAD interacting protein 1|Smad-interacting protein 1|zinc finger homeobox 1b
DE
MMU
Zfx
MMU0000044.1
Aliases
✘
RP23-269L6.2 Zfx5 Zfx5 6 Zfx6
X-linked zinc finger protein
zinc finger X-chromosomal protein
zinc finger protein X-linked 5
zinc finger protein X-linked 6
PAF
HSA
ZNF274
HSA0000060.1
Aliases
✘
SP2114 HFB101 ZF2 ZKSCAN19
KRAB zinc finger protein HFB101
neurotrophin receptor-interacting factor homolog
zinc finger protein HFB101
zinc finger protein with KRAB and SCAN domains 19
zinc finger protein zfp2
Optional.

Please enter an email address IF you wish to recieve a link to your results.

E-mail Address:

Apply as filter on top of PSSM (Recommended!) [What's the difference?]